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Code:
TOE
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Time Slot/Poster Number:
4:25-4:40
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Session:
Solids Bio-Applications
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High-resolution structure of a drug-complexed proton channel in lipid bilayers from solid-state NMR
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| Sarah D. Cady1; Klaus Schmidt-Rohr1; Wenbin Luo1; Jun Wang2; Cinque S. Soto2; William F. DeGrado2; Mei Hong1
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1Iowa State University, Ames, IA; 2University of Pennsylvania, Philadelphia, PA
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| Abstract |
The high-resolution structure of the drug-complexed influenza M2 proton channel is determined using solid-state NMR. Using multi-spin 13C-2H REDOR, we show that two amantadine-binding sites exist in M2 in phospholipid bilayers. The high-affinity site, occupied by a single amantadine (Amt), is located in the N-terminal channel pore. The 15 deuterons of perdeuterated Amt speeded up REDOR dephasing of the 13C-labeled peptide, allowing distance quantification that resulted in a 0.3 Å-resolution solid-state NMR structure of the drug-complexed M2 at high pH in lipid bilayers. Under excess Amt concentrations, a second, lower-affinity, binding site was also observed. 2H NMR lineshapes reveal different orientation and dynamics of the drug in the two binding sites. Water-protein 1H spin diffusion experiments show that Amt reduces the water accessibility of pore-facing residues in the middle of the transmembrane helix, consistent with the pore location of the high-affinity binding site. 3D lattice simulations of the spin diffusion buildup indicate that the water-exposed protein surface area is reduced by 50% from the low-pH open state to the high-pH drug-bound state. These results indicate that amantadine inhibits the influenza M2 proton channel by physical occlusion and interruption of the water wire. The study demonstrates the ability of solid-state NMR to elucidate small-molecule interactions with membrane proteins and determine high-resolution structures of their complexes directly in lipid bilayers.
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Code:
TOE
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Time Slot/Poster Number:
5:05-5:20
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Session:
Solids Bio-Applications
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Purely Spectroscopic Assignment of Solid-State NMR Spectra of Magnetically Aligned Pf1 Phage Using Mismatched Hartmann-Hahn Magnetization Transfer
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| Robert W. Knox; Alexander A. Nevzorov
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North Carolina State University, Raleigh, NC
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| Abstract |
A purely spectroscopic means of assignment remains an outstanding problem in NMR of oriented membrane proteins. Here we implement the recent method based on the transfer of magnetization between the low spins via the proton bath under mismatched Hartmann-Hahn conditions combined with a separated-local field experiment. The arising cross-peaks establish connectivity between the 15N spins of the backbone, thus providing a new method for assignment. Uniformly 15N-labeled Pf1 phage (provided by S. J. Opella, UCSD) has been used to test the applicability of the method. About 80% of the original assignments have been confirmed, which results in only 1.3 Angstrom backbone rmsd relative to the original structure (1ZN5). Moreover, the present method does not require multiple selectively labeled samples.
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Code:
TOE
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Time Slot/Poster Number:
5:20-5:45
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Session:
Solids Bio-Applications
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Solid State NMR Studies of Biomaterials: The Structure of a Surfaced-Adsorbed Protein
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| Gary Drobny
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University of Washington, Seattle, WA
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| Abstract |
The long-term objective of our research is to elucidate the molecular recognition mechanisms used by proteins to control biomineralization processes. A variety of interesting proteins that are found in mineralized tissues act as nature's crystal engineers, where they control the growth of inorganic composites such as hydroxyapatite (HAP) (the mineral phase found in bone/teeth). A particularly important class of acidic proteins found in hard tissues is known to regulate normal hard tissue formation and remodeling, and they are also involved in pathological processes such as dental caries, kidney stone formation and arterial calcification. However, due to the difficulties in studying the protein structure and function at inorganic solid surfaces, there is still remarkably little known of the molecular structure-function relationships governing hard tissue engineering. Our group has been developing and applying solid-state NMR (ssNMR) techniques together with advanced computational methods to determine protein structure and dynamics on their biologically relevant hydroxyapatite surface, together with the inter-related mechanistic characterization of hydroxyapatite recognition and crystal growth dynamics. In this talk we will present a full three-dimensional statherin structural model based on NMR experimental constraints, that connects the molecular mechanisms underlying hydroxyapatite adsorption thermodynamics and crystal engineering function. This molecular insight is being used in outside but related projects in our group to design biomimetic peptide coatings for biomaterial/tissue engineering applications, and could provide new routes to inhibiting the bacterial adhesion to material surfaces.
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